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Software | Python2 Version | Python3 Version | Description | in devel_tools | ||
---|---|---|---|---|---|---|
all-dev | y | |||||
blaze | 0.10.1 | 0.10.1 | An interface to query data on different storage systems | y | ||
cutadapt | 1.18 | 1.18 | Finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads | y | ||
dendropy | phylogenetic computing | y | ||||
freetype-dev (libfreetype6-dev) | This package contains all of the supplementary files you need to develop your own programs using the FreeType 2 library. | y | ||||
leukgen-disambiguate | 1.0.1 | 1.0.1 | Disambiguate reads mapping to multiple genomes. This is a frozen release with some bug fixes of the original AstraZeneca-NGS/disambiguate v1.0. | y | ||
MACS2 | 2.1.2 | Model Based Analysis for ChIP-Seq data | y | |||
maplot | 1.0.2 | 1.0.2 | Python package for creating interactive MA-plots | y | ||
matplotlib | 2.1.1 | 3.2.1 | python 2D plotting library | y | ||
networkx | 2.2 | 2.0 | Creation, manipulation, and study of the structure, dynamics, and functions of complex networks. | y | ||
nimfa | 1.3.4 | 1.3.4 | Nonnegative matrix factorization | y | ||
numpy | 1.13.3 | 1.13.3 | scientific computing with Python | y | ||
pandas | 0.22.0 | 0.22.0 | Python Data Analysis Library | y | ||
patsy | 0.4.1+dev | 0.2.1 | y | pip | Python installation program (to Patsy is a Python library for describing statistical models (especially linear models, or models that have a linear component) and building design matrices. Patsy brings the convenience of R “formulas” to Python. | y |
pip | Python installation program (to install python modules) | y | ||||
plotly | 4.0.0 | 4.0.0 | An open-source, interactive data visualization library for Python | y | ||
pysam | 0.8.4 | 0.8.4 | a python module for reading, manipulating and writing genomic data sets | y | ||
pyvttbl | 0.5.2.2 | 0.5.2.2 | Multidimensional pivot tables, data processing, statistical computation | y | ||
reportlab (->biopython?) | 3.4.0 (->1.70) | 3.5.12 (->1.73) | The ReportLab Toolkit. An Open Source Python library for generating PDFs and graphics. (→ Freely available tools for computational molecular biology) | y | ||
rpy2 | 2.8.6 | 2.9.2 | Python interface to R | y | ||
seaborn | 0.8.1 | 0.8.1 | statistical data visualization | y | ||
scipy | 0.19.1 | 0.19.1 | Collection of Python software for mathematics, science, and engineering. | y | ||
sklearn | Machine Learning in Python | y | ||||
skimage | Image processing in Python | y | ||||
statsmodels | 0.8.0 | 0.8.0 | Estimation of statistical models | y |
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