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Logistics: We will meet at FNT 1.104 from Tuesday May 27 to Friday May 30 at 1:30-4:30pm for our class. In-person attendance is recommended, because the course is more difficult to follow remotely. However, if you would like to attend virtually, use this zoom link: https://utexas.zoom.us/j/96012546979?pwd=Xx4Je9KHZVKSFJFhAQwuwWGihL1kyS.1 Zoom Instructions: Please make sure your zoom version is updated ( and that you have a zoom account ) -- this is required to join a UT-sponsored Zoom session. See this link for more details about zoom requirements: https://zoom.its.utexas.edu/home Other setup: Please make sure you have an ssh client installed on your computer. All macs come with terminal, so no installation is required. For windows laptops, install putty and winSCP. |
Course Overview
This is a course designed to give you an introduction to data manipulation and analysis in a hands-on manner. It will consist of lectures and guided tutorials.
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To teach you the Unix (Bash) environment and how to work effectively at the command line.
To teach you about various Unix tools that are available for manipulating files at the command line.
To familiarize you with R and RStudio and how to perform basic data analysis tasks.
To use the above skills in an integrated manner to take data from raw files and produce clean visualizations in R.
Your Instructor
Name | Affiliation | Expertise | How to contact? |
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Matt Bramble | CBRS, bioinformatics group | Unix, R, Python, epigenetics. | matthew.bramble@austin.utexas.edu or come to FNT1.206D |
Day 1: Introduction to Unix
1. Login to the POD
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Login to the POD If you are using a terminal, open the terminal, and type: ssh username@gsafcbig01.ccbb.utexas.edu If you are using putty, open it and enter the following: hostname: gsafcbig01.ccbb.utexas.edu Upon prompting, enter your username and the password |
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For now, just copy the appropriate line above, paste it into your Terminal window (after logging on), then press Enter.
Logging in via RStudio web
If you're attending remotely or do not have access to the UT VPN, you can use the Terminal functionality in the RStudio web application.
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For now, just copy the appropriate line above, paste it into your Terminal window (after logging on), then press Enter.
2. Go to the Unix component of the course
Open the following link in a new window or tab. Be sure to bookmark this introduction page. We will be returning.
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