SSH into
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lonestar6 and copy files needed for today's exercises.
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Get set up for the exercises
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ssh <username>@ls6.tacc.utexas.edu cds cd my_rnaseq_course cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_2/reference_2025/STAR_genome day_2/reference/ cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_3_partA . cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_3_partB . |
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If you've already copied data over, check that the data files required are there.
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Get set up for the exercises
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ssh <username>@ls6.tacc.utexas.edu
cds
cd my_rnaseq_course
ls day_3_partA/gene_counting_exercise/
ls day_3_partA/gene_expression_exercise/
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Open another SSH session and request a idev session
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set up idev session in another tab
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ssh <username>@ls6.tacc.utexas.edu idev -m 120 -q normal -A OTH21164 -r RNAseqrna-seq-class-0611 #Leave out -r RNAseqrna-seq-class-0611 if your TACC id is not part of the reservation |
Go back to Course Outline
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