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- Run breseq on 7 different E. coli clones evolved for 40,000 generations
- Use the packaged gdtools commands to generate a comparison table of all mutations from all 7 samples
- Learn shortcuts for compressing, transfering, and extracting multiple folders/files with single commands
- Visualize the data off of TACC
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Setting up the run
The data files for this example are in the following path: $BI/ngs_course/ecoli_clones/data/ go ahead and copy them to a new folder in your $SCRATCH directory called BDIB_breseq_multi-sample:
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