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Alternatively, you could exclude the bowtie2 directory entirely via a fn_ignore_dirs section list item in multiqc_config.yaml, like this:
References
Main MultiQC links
- Website: http://multiqc.info/
- Documentation: http://multiqc.info/docs
- MultiQC Github repo: https://github.com/ewels/MultiQC
- MultiQC test data repo: https://github.com/ewels/MultiQC_TestData
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