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Note
titleRunning this data set not recommended

Running this data set yourself is not actually recommended, or at least not recommended until you have completed some of the advanced breseq tutorials for 3 reasons:

  1. At best, this data set expected to take ~1 hour to complete.
  2. Version conflicts with bowtie2 between TACC and breseq prevent accessing the 'best' time.
  3. Potential issue with the launcher module.

3 can be worked around fairly simply as can be seen in the multiqc tutorial 2 will be handled in breseq installation tutorial after which the data will still take ~1hr.

Therefore while the information of how to run this data is below, it is recommended that the majority of you focus on just downloading the results of that run when I did it.

Code Block
languagebash
titlepartial scp command to copy to the current directory of your local computer
scp <user>@ls5.tacc.utexas.edu:/corral-repl/utexas/BioITeam/ngs_course/lambda_mixed_pop/breseq_SRR030257_run_output_folder.tar.gz .

Once you have downloaded the compressed output to your local computer you can jump down to evaluating evaluating it, or read through the commands I used for the run and some more explanation of what is going on.

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