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1. Make 2 changes to your .bashrc file using nano

   Code Block
   language bash title modify your your .bashrc file in your $HOME directory
   # comment out the line in the module system listing module load bowtie/2.3.4 # add the following line in the section dealing with the path variable export PATH=$PATH:$WORK/src/bowtie2-2.3.5.1-linux-x86_64 #temp bowtie2 executables

2. Copy the updated version of the .bashrc file from $BI/scripts

   Code Block
   language bash title Preferred solution
   cp $BI/script/corral-repl/utexas/BioITeam/scripts/GVA2020.bashrc.updated_bowtie2 $HOME/.bashrc chmod 700 .bashrc

Finally, log out of tacc and log back in using ssh. 

which -a bowtie2
bowtie2 --version

should now return 1 line similar to '/work/01821/ded/lonestar/src/bowtie2-2.3.5.1-linux-x86_64/bowtie2' and the first line of the 2nd command end with "version 2.3.5.1". If not get my attention on zoom.

Cloning breseq

Compiling breseq

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