Versions Compared

Old Version 3

changes.mady.by.user Deatherage, Daniel E

Saved on

compared with

New Version 4

changes.mady.by.user Deatherage, Daniel E

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Code Block
languagebash
titleCopy executables to somewhere already in your path (IE $HOME/local/bin)
collapsetrue
cp $WORK/src/SPAdes-3.13.0-Linux/bin/* $HOME/local/bin  #Note that by specifying the full path all the files and the destination, this command can be run from anywhere on TACC.
cp -r $WORK/src/SPAdes-3.13.0-Linux/share/spades $HOME/local/share
Code Block
languagebash
titleSuggested line to add to your .bashrc file to directly access executables
collapsetrue
export PATH=$WORK/src/SPAdes-3.13.0-Linux/bin:$PATH
# This line must be added to the .bashrc file found in your $HOME directory, in section 2. I typically add all modifications 1 after the other so the most recent thing I have added is the last line in this section, but is searched first when looking for commands.

...