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If you try to run the BioITeam version of the script from the head node /corral-repl/utexas/BioITeam/bin/bp_seqconvert.pl , you get the following error message:
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After loading the bioperl library to get past the error mesagemessage, run the script from the BioITeam without any arguments to get the help message:
| Code Block |
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module load bioperl
/corral-repl/utexas/BioITeam/bin/bp_seqconvert.pl
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If you find yourself needing to do lots of sequence conversions, and find the bp_seqconvert.pl script useful to do them, you may want to add a 'module load bioperl/1.007002' line to your .bashrc file. Recall that because the bp_seqconvert.pl script exists in 2 different locations as 2 different copies only the first one in the PATH variable will be used. Using the which -a command you see the copy used will be the module version unless you specifically envoke the BioITeam version. In this case it does not matter as the scripts are the same.
Convert a gbk reference to a embl reference
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