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- Quick introduction to a self contained/automated pipeline to identify mutations.
- Explain the types of mutations found in a complete manner before using methods better suited for higher order organisms.
- Examine the same data used in the Mapping, and SNV tutorials as breseq output.
Input data / expectations:
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breseq should now run using the breseq command. breseq without any options will show you what the command expectations are while adding .
| Info | ||
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| Not all programs are configured to tell you what it expects just from typing the name of it. Some require the name of the command followed by one of the following: -h or --help or ? while others require preceding the command name with "man" (short for manual). If all that fails google is your friend for all programs not named "R" ... for R google is still your best bet, but it won't be your friend. In the specific case of R, adding the word "stats" somewhere to the search will greatly help things in my experience. |
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