Versions Compared

Old Version 1

changes.mady.by.user Deatherage, Daniel E

Saved on

compared with

New Version 2

changes.mady.by.user Deatherage, Daniel E

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

Table of Contents

Overview

This is mostly for anyone who didn't attend Monday's class for whatever reason. While the setup tutorial is full of useful information, this turns that tutorial into a black box and accomplishes the requirements needed for other tutorials to work. It is highly recommended that you at least read through the entire setup tutorial when you have time.

Objectives

  1. Verify course bashrc file is active
  2. Verify conda is installed

Logging in with ssh

If you need help logging into stampede2 the powershell and terminal tutorials are available if you need help remembering how to do this.

.bashrc

After logging in, You should see the following prompt:

...

Warning
titleONLY if you see something else should you use the commands in this section


Code Block
languagebash
titleUse mv to change your .profile file to a backup copy
cdh
mv .profile profile_pre_GVA_backup
mv .bashrc bashrc_pre_GVA_backup
cp /corral-repl/utexas/BioITeam/gva_course/GVA.bashrc .bashrc
cp /corral-repl/utexas/BioITeam/gva_course/GVA.profile .profile
chmod 700 .bashrc
chmod 700 .profile
logout

after logging back in with ssh you should see the following:

No Format
tacc:~$

If not, get my attention.

conda

Code Block
languagebash
titleActivate a conda environment
conda activate base

...