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Code Block
conda activate GVA-bowtie2-mapping
bowtie2-build NC_012967.1.fasta NC_012967.1
bowtie2 -t -p 6448 -X 5000 --rf -x NC_012967.1 -1 61FTVAAXX_2_1.fastq -2 61FTVAAXX_2_2.fastq -S 61FTVAAXX.sam

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