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  1. Content
  2. Bioinformatics Team Home
  3. zArchive
  4. Training
  5. SSC Intro to NGS Bioinformatics Course

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Scott Patrick Hunicke-Smith

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  • General introduction (SPHS)
    • Introduction to Bioinformatics Prezi
  • Linux refresher (SPHS)
    • Step 1: Start somewhere
    • Step 2: Establishing a profile on Lonestar
    • Step 3: Editing files
    • Step 4: Final explanations
  • Using TACC's Lonestar Cluster (SPHS)
    • Diagram of Lonestar's directories
    • Diagram of running a job on Lonestar
    • Using SFTP for file browsing on Linux.
  • Recap and "for further study"

Part 2: Read Mapping

  • Introduction to next-gen sequencing technologies (JB)
    • Paper comparing NGS technologies (Liu et al., 2012)
    • Official Illumina video | Another Illumina video
    • Broad Center GA Boot Camp
  • (JB)
  • Mapping tutorial (bowtie, BWA, bowtie2) (JB)
  • Integrative Genomics Viewer (IGV) tutorial (JB)
  • Tutorial - Start diploid mapping for Day 2

...

General
Content
Integrations
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