...
Name | Initials | Affiliation | Expertise |
|---|---|---|---|
SPHS | Director GSAF | Everything, if loosely defined (but especially | |
JB | Asst. Prof. Biochemistry | Microbes, Perl, C++, Mac, miscellanea | |
Dhivya Arasappan | DA | GSAF | RNA-seq, transcriptome assembly |
Anna Battenhouse | AB | Iyer Lab | Eukaryotes, Bash scripting, UCSC Genome Browser |
Daechan Park | DP | Iyer Lab | Eukaryotes ChIP-seq, Python, Samtools |
Nichole Bennett | NB | Parmesan/Singer Labs | Python, R, Unix |
Dan Deatherage | DD | Barrick Lab | Unix, Python, NGS Library Prep |
...
- General introduction (SPHS)
- Linux refresher (SPHS)
- Using TACC's Lonestar Cluster (SPHS/AR)
...
- Introduction to next-gen sequencing technologies (SPHSJB)
- (JB)
- Mapping tutorial (bowtie, BWA, bowtie2) (JB)
- Integrative Genomics Viewer (IGV) tutorial (JB)
- Tutorial - Start diploid mapping for Day 2
...