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This has already been done, and the resulting files are at this URL: http://loving.corral.tacc.utexas.edu/bioiteam/ucsc_custom_tracks/. These are hg18 SNP calls from published Iyer Lab CTCF ChIP-seq data in Progeria cells. The VCF file was produce using Broad's GATK.
- Add custom tracks (be sure to pick assembly March 2006, NCBI36/hg18)
- Here is the track configuration line
Code Block track type=vcfTabix name="progeria_ctcf_snp_calls" bigDataUrl="http://loving.corral.tacc.utexas.edu/bioiteam/ucsc_custom_tracks/progeria_ctcf.vcf.gz"
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