In this exercise, we will analyze RNA-seq data to measure changes in gene expression levels between wild-type and mutant strains of the bacterium Listeria monocytogenes.
Before we begin...
Please add this line to your ~/.profile_user file:
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. /corral-repl/utexas/BioITeam/bin/profile_ngs_course.bash
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This will load a configuration file that we've created that sets up your environment in some nice ways...
Download data files
Copy the data files for this example into your $SCRATCH space:
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