Content Comparison

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• General introduction (SPHS)
  • Introduction to Bioinformatics Prezi
• Getting started at TACC
• Linux refresher (SPHS)
  • 
• Using TACC's Lonestar Cluster
  • Diagram of Lonestar's directories
  • 
  • Diagram of running a job on Lonestar
  • 
• Introduction to next-gen sequencing technologies
  • Official Illumina video | Another Illumina video
  • Broad Center GA Boot Camp
  • GSAF adaptor and barcode sequence resource
• Application: Example genome variant calling pipeline
  • 
• Evaluating your raw sequencing data (JB)
• Introduction to Mapping and Tutorial
  • (JB)
  • Mapping tutorial (bowtie2, BWA) (JB/GC)
• Integrative Genomics Viewer (IGV) tutorial (Part 1) (JB)
• start diploid mapping (copy from Day 2 content)

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• Introduction to genome variation
• (JB)
• Variant calling tutorial (SAMtools)Image Removed (JB)
• Integrative Genomics Viewer (IGV) tutorial (Part 2) (JB)
• Visualize mapped data at UCSC genome browser
• Image Added (JB)
• Calling variants in diploid genomes
• Variant calling with GATK
• Annotating variants (SPHS/DA)

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