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  1. Content
  2. Bioinformatics Team Home
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  4. Training
  5. SSC Intro to NGS Bioinformatics Course

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Scott Patrick Hunicke-Smith

Scott Patrick Hunicke-Smith

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  • General introduction (SPHS)
    • Introduction to Bioinformatics Prezi
  • Linux refresher (SPHS)
    • Step 1: Start somewhere
    • Step 2: Establishing a profile on Lonestar
    • Step 3: Editing files
    • Step 4: Final explanations
  • Using TACC's Lonestar Cluster (SPHS/AR)
    • Diagram of Lonestar's directories
    • Diagram of running a job on Lonestar
  • Introduction to next-gen sequencing technologies (SPHS)
    • Official Illumina video | Another Illumina video
    • Broad Center GA Boot Camp
    • GSAF adaptor and barcode sequence resource
  • Application: Example genome variant calling pipeline (JB)
  • Evaluating your raw sequencing data (JB/AB)
  • Introduction to Mapping and Tutorial
    • (JB)
    • Mapping tutorial (bowtie2, BWA) (JB/GC)
  • Integrative Genomics Viewer (IGV) tutorial (Part 1) (JB)
  • Tutorial - Start diploid mapping for Day 2

...

General
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Integrations
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