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  1. Content
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  5. SSC Intro to NGS Bioinformatics Course

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Version Old Version 99 New Version 100
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Geoffrey R Colburn

Jeffrey E Barrick

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May 24, 2012

May 24, 2012

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  • Calling variants in diploid genomes
  • Annotating variants

Additional topics

  • SRA toolkit, UCSC Genome Browser
  • Variant calling with GATK
  • Genome variation in mixed samples (FreeBayes, deepSNV)
  • Identifying structural variants (SVDetect)

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  • Genome Assembly
  • Genome Assembly (velvet)
  • Genome Annotation (Glimmer3)
  • Evaluating & Visualizing assemblies
  • SRA toolkit, UCSC Genome Browser
  • Custom Genome Databases

Resources

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General
Content
Integrations
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