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- General introduction (SPHS)
- Getting started at TACC
- Linux refresher (SPHS)
- Linux cheat sheet
- Using TACC's Lonestar Cluster
- Diagram of Lonestar's directories
- Lonestar cheat sheet
- Diagram of running a job on Lonestar
- launcher_creator cheat sheet
- Introduction to mapping next-gen sequencing technologies presentation? (??)
- Application: Single-nucleotide variant (SNV) calling
- Workflow diagram of variant calling
- Evaluating your raw sequencing dataAlignment with bowtie, BWA (??)
- Introduction to mapping presentation (JB)
- Mapping tutorial (bowtie2, BWA) (JB/GC)Download Presentation on Mappers, etc. NGS class 22Mar12.ppt
- start diploid mapping
Enrichment modules (4:30-5:00)
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