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Go through the IGV tutorial paying special attention to how to load IGV on your local computer and the 2nd set of data covering human information.

Yesterday we went through how to launch IGV on your local computer (IGV tutorial).

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title	Review the specifics of IGV in yesterday's tutorial, or click here for a brief summary

Cheatsheet of what to do.

Code Block

title	In IGV, use "file -> load from URL" to open each of the following URLs

http://web.corral.tacc.utexas.edu/web/GSAF/gva14/NA12878.chrom20.ILLUMINA.bwa.CEU.exome.20111114.bam
http://web.corral.tacc.utexas.edu/web/GSAF/gva14/NA12891.chrom20.ILLUMINA.bwa.CEU.exome.20111114.bam
http://web.corral.tacc.utexas.edu/web/GSAF/gva14/NA12892.chrom20.ILLUMINA.bwa.CEU.exome.20111114.bam
http://web.corral.tacc.utexas.edu/web/GSAF/gva14/NA12878.chrom20.GATK.vcf
http://web.corral.tacc.utexas.edu/web/GSAF/gva14/NA12891.chrom20.GATK.vcf
http://web.corral.tacc.utexas.edu/web/GSAF/gva14/NA12892.chrom20.GATK.vcf
http://web.corral.tacc.utexas.edu/web/GSAF/gva14/NA12878.chrom20.samtools.vcf
http://web.corral.tacc.utexas.edu/web/GSAF/gva14/NA12891.chrom20.samtools.vcf
http://web.corral.tacc.utexas.edu/web/GSAF/gva14/NA12892.chrom20.samtools.vcf

We will now proceed with the presentation, and hopefully the copy will finish during that.

Versions Compared

Old Version 9

New Version 10

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