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Name

Initials

Affiliation

Expertise

Scott Hunicke-Smith

SPHS

Director GSAF

Everything, if loosely defined (but especially awk)

Jeff Barrick

JB

Asst. Prof. Biochemistry

Microbes, Perl, C++, Mac, miscellanea

Dhivya Arasappan (in absentia)

DA

GSAF

RNA-seq, transcriptome assembly

Anna Battenhouse

AB

Iyer Lab

Eukaryotes, Bash scripting, UCSC Genome Browser

Daechan Park

DP

Iyer Lab

Eukaryotes ChIP-seq, Python, Samtools

Nichole Bennett

NB

Parmesan/Singer Labs

Python, R, Unix

Dan Deatherage

DD

Barrick Lab

Unix, Python, NGS Library Prep

instructor action item list

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Info for the instructors
Info for the instructors

Day 1a: Scott 1b: Jeff
Day 2a: Jeff, Daechan, Anna, 2b: Scott
Day 3a: Jeff 3b: Iyer lab
Day 4a: Jeff, 4b: Scott

Instructors: meet 9am Monday for final check

Each Part 1/Part 2 section needs to be standardized with:
*Learning Objectives
*Theory
*Workflow diagram (data, toolbox/recipe, exercises)
*Tutorial (bulk of time here)
*Recap learning objectives
*Next steps...

Anchor
day1
day1

Day 1: Linux/TACC Introduction and Read Mapping

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