...
- Differential gene expression analysis
- Splice variant analysis
<break> - non-coding RNA analysis unique mapping (shrimp/grep), miRNA’s abundance/editing, other: snoRNA, snRNA, lincRNA, piRNA, tRNA, degradome, etc. etc. (not poly-A; not annotated)
- Transcriptome assembly & annotation velvet/oases, TrinityRNAseq; BLAST, GOminer, (ELI?)
Day 4: Assembly and Annotation
Resources
- Tool list, file formats & more
- Scott's list of linux one-liners
- Exercises
...