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Day 1: Linux/TACC Introduction and Read Mapping
- Introduction to Bioinformatics Prezi
- Getting started
- Linux refresher
- Using TACC's Lonestar cluster
- Introduction to mapping (bowtie, BWA)
- Introduction to variant calling (SAMtools)
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- Introduction to Bioinformatics Prezi
- Download Presentation on Mappers, etc.
- Diagram of Lonestar's directories Diagram of running a job on Lonestar
Extras
Day 2: Calling Genome Variants
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