Content Comparison

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In a terminal on your Desktop (local) machine.

cd ~/Desktop
scp -r username@tacc.utexas.edu:/corral-repl/utexas/BioITeam/ngs_course/mauve_examples ~/Desktop

Example: Comparing two whole genomes

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Choose: File → Align with progressiveMauve.

Navigate to the mauve_dataexamples folder that you downloaded and choose:

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Example: Comparing assemblies to a reference genome

Next, we are going to compare several assemblies that were created in.

Choose: Tools → Move Contigs...

Navigate to the mauve_examples folder that you downloaded and choose:

• NC_000913.2.gbk
• pairedc20.fa
• pairedc25.fa
• pairedc50.fa

Transferring annotation

Mauve has a useful feature to transfer the coordinates of genes across the alignment that it has made. This can be a good way of assigning orthologs.

Choose: Tools → Export... → Export Orthologs

Other ways to create genome graphics

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