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- General introduction (SPHS)
- Getting started at TACC
- Linux refresher (SPHS)
- Using TACC's Lonestar Cluster
- Introduction to next-gen sequencing technologies
- Application: Example genome variant calling pipeline
- Evaluating your raw sequencing data (JB)
- Introduction to Mapping and Tutorial
(JB)- Mapping tutorial (bowtie2, BWA) (JB/GC)
- Integrative Genomics Viewer (IGV) tutorial (JB)
- start diploid mapping (copy from Day 2 content)
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