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module load bedtools

Code Block

AlikeFinding alike mutations.

intersectBed -a bowtie.vcf -b bwa.vcf > intersect.vcf

Code Block

UniqueFinding unique mutations for each mapper.

subtractBed -a bowtie.vcf -b intersect.vcf > unique_bowtie.vcf
subtractBed -a bwa.vcf -b intersect.vcf > unique_bowtie.vcf

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