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- Review mapping reads with an example of how to use qsub to map many data sets in parallel on TACC.
- Review samtools and SAM/BAM conversion.
- How Learn how to use bedtools/HTseq to count reads overlapping genes.
- Basic use of the R shell Become familiar with basic R usage and installing BioConductor modules.
- Use Learn how to use edgeR/DESeq to perform statistical analyses of differential gene expressionidentify differentially expressed genes.
Table of Contents
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