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- Introduction to genome variation
(JB)- Variant calling tutorial (SAMtools) (JB)
- Integrative Genomics Viewer (IGV) tutorial (Part 2) (JB)
- (JB)
- Visualize mapped data at UCSC genome browser (AB)
- Calling variants in diploid genomes (SPHS)
- Variant calling with GATK (SPHS)
- Annotating variants (SPHS)
Enrichment module (12:30-1:30)
Enrichment modules (4:30-5:30)
- samtools tricks (DP)Installing Linux tools (JB)
- Shell Scripting (SPHS/AB)
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- Intro materials - (SPHS - JB/DA)
- Differential gene expression analysis (JB - bedtools & R)
- Differential expression with splice variant analysis
- MvA, volcano, heat maps, maybe goseq (R), cumberbund - check R version (SPHS/DA)
Enrichment module (12:30-1:30)
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