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The install commands may take several minutes to complete. You can read ahead while they run or even open a new terminal window and connect it to Lonestar and continue onward in the tutorial as you wait for R. |
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login1$ module load R
login1$ R
R version 2.15.3 (2013-03-01) -- "Security Blanket"
Copyright (C) 2013 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> source("http://bioconductor.org/biocLite.R")
Warning in install.packages("BiocInstaller", repos = a["BioCsoft", "URL"]) :
'lib = "/opt/apps/R/2.15.3/lib64/R/library"' is not writable
Would you like to use a personal library instead? (y/n) y
Would you like to create a personal library
~/R/x86_64-unknown-linux-gnu-library/2.15
to install packages into? (y/n) y
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> biocLite("DESeq")
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> biocLite("edgeR")
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> q()
Save workspace image? [y/n/c]: n
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