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  1. Content
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  5. SSC Intro to NGS Bioinformatics Course

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Scott Patrick Hunicke-Smith

Jeffrey E Barrick

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May 22, 2012

May 22, 2012

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  • SRA toolkit, UCSC Genome Browser
  • Variant calling with GATK
  • Genome variation in mixed samples (FreeBayes, deepSNV)
  • Identifying structural variationvariants (SVDetect)

Extras

  • Download presentation on Advanced Genome Variant Calling
  • Practical advice - short read re-sequencing data

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General
Content
Integrations
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