August 2012
| Table of Contents |
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- General introduction (SPHS)
- Getting started at TACC
- Introduction to mapping
- Using the Integrative Genomics Viewer (IGV) (JB)
- start diploid mapping
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- Introduction to variant calling (SAMtools) (SPHS - expand to diploid, cover GATK pipeline; annovar seqanswer)
- Assess mapped data (VCF? BAM?) at UCSC genome browser (AW)
- Annotating variants (SPHS/DA)
- Download presentation on Advanced Genome Variant Calling|^Barrick_AdvancedGenomeVariantCalling_2012.pdf||||||||||||||||||||\
Enrichment module (4:30-5:00)
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