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  5. SSC Intro to NGS Bioinformatics Course

Content Comparison

Versions Compared

Version Old Version 243 New Version 244
Changes made by

Scott Patrick Hunicke-Smith

Jeffrey E Barrick

Saved on

May 19, 2013

May 19, 2013

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Enrichment module (12:30-1:30)

  • Installing Linux tools (JBShell Scripting (SPHS/AB)

Enrichment modules (4:30-5:30)

  • Shell Scripting (SPHS/ABInstalling Linux tools (JB)

Extras

  • Calling variants in diploid genomes (SPHS)
  • Annotating variants (SPHS)
  • (JB)
  • Visualize mapped data at UCSC genome browser (AB)
  • Genome variation in mixed samples (FreeBayes, deepSNV) (JB)
  • Identifying structural variants (SVDetect) (JB)
  • SRA toolkit (AB)

...

General
Content
Integrations
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