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| Table of Contents |
|---|
Your Instructors
Name | Initials | Affiliation | Expertise |
|---|---|---|---|
Scott Hunicke-Smith | SPHS | Director GSAF | Everything (but especially |
Jeff Barrick | JB | Asst. Prof. Biochemistry | Microbes, Perl, Mac |
Dhivya Arasappan | DA | GSAF | RNA-seq, transcriptome assembly |
Anna Battenhouse | AB | Iyer Lab | Eukaryotes, Bash scripting, UCSC Genome Browser |
Daechan Park | DP | Iyer Lab | Windows |
Geoff Colburn | GC | Barrick Lab | Mappers, variant callers |
Aaron Reba | AR | Barrick Lab | TACC, Python |
Vinicio Reynoso | VR | Barrick Lab | Genome assembly |
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- General introduction (SPHS)
- Getting started at TACC
- Linux refresher (SPHS)
- Using TACC's Lonestar Cluster (SPHS/AR)
- Introduction to next-gen sequencing technologies (SPHS)
- Application: Example genome variant calling pipeline (JB)
- Evaluating your raw sequencing data (JB/AB)
- Introduction to Mapping and Tutorial
(JB)- Mapping tutorial (bowtie2, BWA) (JB/GC)
- Integrative Genomics Viewer (IGV) tutorial (Part 1) (JB)
- start diploid mapping (copy from Day 2 content)
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