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Warning
titleBe very careful how you copy and paste from the example below.

Do not copy the > characters. Some commands are spread across multiple lines. The > are missing at the beginning of the lines after the first one in these cases. So this:

Code Block
> y <- c(
    1:10
  )
> y

Is the same as:

Code Block
> y <- c(1:10)
> y

It's ok to copy across the multiple lines and past into R as long as you get all the way to the closing parenthesis.

The commands for this example are also described in the DESeq vignette (PDF) .

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