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If you do not have an alignment file in the SAM format you may want to start with Introduction to mapping (bowtie, BWA).
Convert to BAM format.
| Code Block |
|---|
samtools sort -bS input.sam output.bam |
...
...
If you do not have an alignment file in the SAM format you may want to start with Introduction to mapping (bowtie, BWA).
| Code Block |
|---|
samtools sort -bS input.sam output.bam |
...