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  5. SSC Intro to NGS Bioinformatics Course

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Anna Battenhouse

Daechan Park

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  • Mapped read data evaluation (SAMtools) (SPHS)Samtools tricks (, DP)
  • Genome variation in mixed samples (FreeBayes, deepSNV) (JB)
  • Identifying structural variants (SVDetect) (JB)
  • Practical advice - short read re-sequencing data
  • SRA toolkit (AB)

...

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