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The general command to run the software is either:
| Code Block |
|---|
module load java
java -jar readseq.jar
java -cp readseq.jar run
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This should return the help for readseq.
(Why the module load and funny invocation? You are actually using the command java and telling it where to find a "jar" file of java code to run. The -jar and -cp options run it in different ways. It's pretty confusing.)
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