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NC_000913.2.gbk- reference genome for a related (but not identical) strain.singlepairedc20.fa
Be sure to add them in this order! We need the reference first.
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NC_000913.2.gbksingle.fapairedc20.fapairedc25.fapairedc50.fa
Warning! single.fa has a lot of sequences,
Transferring annotation
Mauve has a useful feature to transfer the coordinates of genes across the alignment that it has made by Move Contigs. This can be a good way of assigning orthologs.
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