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  1. If you have a mapping directory with output from the Mapping tutorial and the SNV calling tutorial, then you should use those files for part 1 of this tutorial. You can proceed with either one alone or with both.
  2. Expand
    titleIf you have not done the other tutorials and want a "canned" data set provided for you, click here for example files.
    Code Block
    $BI/gva_course/mapping/IGV  # location of example files
cp -r /corral-repl/utexas/BioITeam/gva_course/mapping/IGV .  # example command to copy to current directoryscp -r username@lonestar.tacc.utexas.edu:/corral-repl/utexas/BioITeam/gva_course/mapping/IGV . # to copy to a local computer skipping the step of copying to a lonestar directory and secure copying from there.

    Then skip down to #Launching IGV.

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