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Jeffrey E Barrick

Jeffrey E Barrick

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Code Block
FILE=SRR034450 && samtools import NC_017544.1.fasta $FILE.sam $FILE.unsorted.bam && samtools sort $FILE.unsorted.bam $FILE && samtools index $FILE.bam
FILE=SRR034451 ;&& samtools import NC_017544.1.fasta $FILE.sam $FILE.unsorted.bam ;&& samtools sort $FILE.unsorted.bam $FILE ;&& samtools index $FILE.bam
FILE=SRR034452 ;&& samtools import NC_017544.1.fasta $FILE.sam $FILE.unsorted.bam ;&& samtools sort $FILE.unsorted.bam $FILE ;&& samtools index $FILE.bam
FILE=SRR034453 ;&& samtools import NC_017544.1.fasta $FILE.sam $FILE.unsorted.bam ;&& samtools sort $FILE.unsorted.bam $FILE ;&& samtools index $FILE.bam

Re-create the launcher script and submit this new job to the queue.:

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