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  1. If you have an intro_to_mapping directory with output from the Mapping tutorial or the Variant calling tutorial, then you should use those files for part 1 of this tutorial. You can proceed with either one alone or with both.
  2. If you do not have any results, you can use some "canned" ones that we provide. Copy the entire contents of this directory back to your local machine:
    Code Block
    $BI/corral-repl/utexas/BioITeam/ngs_course/intro_to_mapping/IGV
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    Help
    Code Block
    
scp -r username@lonestar.tacc.utexas.edu:/corral-repl/utexas/BioITeam/ngs_course/intro_to_mapping/IGV .
    Then skip down to #Launching IGV.

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