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mkdir IGV_export cp -n NC_012967.1.gbk.gff IGV_export # copy the new file you just converted to the export directory cp -n $SCRATCH/bowtie2MappingTutorial/bowtie2/NC_012967.1.fasta IGV_export cp -n $SCRATCH/bowtie2MappingTutorial/bowtie2/NC_012967.1.fasta.fai IGV_export cp -n $SCRATCH/bowtie2MappingTutorial/bowtie2/SRR030257.sorted.bam IGV_export/bowtie.sorted.bam cp -n $SCRATCH/bowtie2MappingTutorial/bowtie2/SRR030257.sorted.bam.bai IGV_export/bowtie.sorted.bam.bai tar -czvf IGV_export.tar.gz IGV_export |
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