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You should now have 3 new .fastq files which we will use to call variants in: DED110_SSCS.fastq, trimmed_1.fastq, and trimmed_2.fastq. We will now run breseq to compare the number and quality of variants called.LINK TO NEXT TUTORIALYou could take these files into a more in depth breseq tutorial that was prepared last year for comparisons of the specific mutations that are eliminated using the error correction (SSCS). Link to other optional tutorial.