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Navigate to the mauve_examples folder that you downloaded and choose:
NC_000913.2.gbksingle.fapairedc20.fapairedc25.fapairedc50.fa
To remind you of what we are looking at:
| Set 1 | Set 2 | Set 3 | Set 4 |
|---|---|---|---|---|
single.fa | pairedc50.fa | pairedc25.fa | pairedc20.fa | |
Read Size | 100 | 100 | 100 | 100 |
Paired/Single Reads | Single | Paired | Paired | Paired |
Gap Sizes | NA | 400 | 400, 3000 | 400, 3000, 1500 |
Coverage | 50 | 50 | 25 for each subset | 20 for each subset |
Number of Subsets | 1 | 1 | 2 | 3 |
Transferring annotation
Mauve has a useful feature to transfer the coordinates of genes across the alignment that it has made. This can be a good way of assigning orthologs.
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