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Day 2: Calling Genome Variants
- Intro?? Bayesian callers, types, etc.
- Introduction to variant calling (SAMtools)
- Visualize mapped data at UCSC genome browser
- Calling variants in diploid genomes
- Variant calling with GATK
- Annotating variants (SPHS/DA)
- Download presentation on Advanced Genome Variant Calling Barrick_AdvancedGenomeVariantCalling_2012.pdf
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