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- Mapped read data evaluation (SAMtools) (SPHS)
- Samtools tricks (DP)
- Genome variation in mixed samples (FreeBayes, deepSNV) (JB)
- Identifying structural variants (SVDetect) (JB)
- Practical advice - short read re-sequencing data
- SRA toolkit, more UCSC Genome Browser (AB)
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Day 3: RNA-seq
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