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Anna Battenhouse

Anna Battenhouse

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Solution
Solution

Solution sections will contain the commands so that you could copy-and-paste them if you have to. They should be exactly accurate.will represent one method of answering the question – but there are often many ways to skin a cat!

Course goals

  • Hands-on, tutorial style – learn by doing
    • common bioinformatics tools & file formats
  • Introduce NGS vocabulary
    • both high-level view and practice with specific tools
  • Cover the NGS basics
    • the first few things you'll do after receiving raw sequences
      • raw sequence preparation
      • alignment to reference
      • basic alignment analysis
  • Understand and practice required skills
    • Get you comfortable with Linux and TACC – your best "frenemies"
    • Make you self-sufficient enough in 4 days to become experts over time
    • Show some "best practices" for working with NGS data

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