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Table of Contents

Communication

Post its

Green post-it – I'm good at the moment.

Pink post-it – I need a bit of help.

Asking questions

Feel free to ask questions any time during the instructor's lecture and demonstrations.

You can also post your question to the Zoom chat.

Getting help

Since most folks are new to the Linux command line, we expect you to run into problems! Please let us know if you're having difficulties in the Zoom chat (FRI students should private chat with their REs first).  Depending on the issue, a TA may take you into a breakout room to help you.

Breakout rooms

We'll sometimes use breakout rooms when working on short assignments, and when troubleshooting problems you run into.

Conventions

If you see a block of text like this:

...

  • Anna Battenhouse, Associate Research Scientist, abattenhouse@utexas.edu

    • BA English literature, 1978

    • Commercial software development 1982 – 2007

    • Joined Iyer Lab 2007 (“retirement career”)

    • BS Biochemistry, UT Austin, 2013

    • Joined the Marcotte Lab and Biomedical the Biomedical Research Support Facility (BRCF) and Marcotte Lab and summer 2017
  • 4th
  • Haridha ShivramVy Dang, haridh@utexas vyqtdang@utexas.edu

    • 6th XXXXX year graduate student in the Iyer the Marcotte Lab 

    • Research Interests: Transcriptional and post-transcriptional regulation of gene expression 

    • Experienced in analyzing RNA-seq, ChIP-seq, RIP-seq, and CLIP-seq datasets

  • Claire McWhite, claire.mcwhite@utexas.edu

    • XXXXX

    • XXXXX (Anything else you want to say)

  • Riddhiman Garge, riddhimankg@utexas.edu

    • XXXXX year graduate student in the Marcotte Lab

    • Research Interests: Proteomics, protein-protein interactions, networksComparative biology XXXXX
    • XXXXX (Anything else you want to say)

About the Iyer Lab

http://iyerlab.org/

Dr. Vishy Iyer, PI

Main focus is functional genomics

    • large-scale transciptional reprogramming
      in response to diverse stimuli
    • Encode consortium collaborator
    • work in human and yeast


Research methods include
  • microarrays (Dr. Iyer was co-inventor)

  • high-throughput sequencing (since 2007)
    • especially ChIP-seq, RNA-seq
    • also RNAmiRNA-seq, RIP-seq, MNase-seq ...
    • we now have nearly 2~2,000 NGS datasets

Course goals

...