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  • Anna Battenhouse, Associate Research Scientist, abattenhouse@utexas.edu

    • BA English literature, 1978

    • Commercial software development 1982 – 2007

    • Joined Iyer Lab 2007 (“retirement career”)

    • BS Biochemistry, UT Austin, 2013

    • Joined the Biomedical Research Support Facility (BRCF) and Marcotte Lab summer 2017
    • Also affiliated with
      • Bioinformatics Consulting Group (BCG)
      • Genome Sequencing and Analysis Facility (GSAF)
  • Vy Dang, vyqtdang@utexas.edu

    • Second year graduate student in the Marcotte Lab 

    • Research Interests: Comparative multi-omics, Systems Biology, and Evolution 

  • Riddhiman Garge, riddhimankg@utexas.edu

    • Biochemistry graduate student in the Marcotte Lab

    • Research Interests: Systems Biology, Synthetic Biology, Evolution, Multi-omics

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it means, type the command ls -h into a terminal window, hit returnEnter, and see what happens.

We intend this course to offer as much self-learning as possible. Consequently, you'll find many sections like this - click on the triangle to expand them:

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  • Hands-on, tutorial style – learn by doing
    • common bioinformatics tools & file formats
  • Introduce NGS vocabulary
    • both high-level view and practice with specific tools
  • Cover the NGS basics
    • the first few things you'll do after receiving raw sequences
      • raw sequence preparation
      • alignment to reference
      • basic alignment analysis
  • Understand and practice required skills
    • Get you comfortable with Linux and TACC – your best "frenemies"
    • Make you self-sufficient enough in 4 5 days to become experts over time
    • Show some "best practices" for working with NGS data

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